.. Virtual Brain Lab documentation master file, created by
.. sphinx-quickstart on Wed Jun  8 16:18:12 2022.
.. You can adapt this file completely to your liking, but it should at least
.. contain the root `toctree` directive.

.. image:: _static/vbl-header.png
  :width: 650
  :alt: logo

=================

VBL
=================

We develop 3D visualization tools for experimenting with, exploring, and simulating brains.

We are located within the `Steinmetz Lab <http://steinmetzlab.net>`_ at the University of Washington and many of our projects are collaborations with the `International Brain Laboratory <https://www.internationalbrainlab.com>`_.

.. raw:: html

   <div style="display:flex;">
   <div style="flex:1;margin-right:5px;">
   <img style="width:70%" src="./_static/images/steinmetz_logo.png">
   </div>
   <div style="flex:1;margin-left:5px;">
   <img style="width:100%" src="./_static/images/ibl_logo.png">
   </div>
   </div>

Please see the individual projects for installation instructions and documentation. You can find all our code on `Github <https://github.com/VirtualBrainLab>`_.

.. toctree::
   :hidden:
   :maxdepth: 2
   :caption: Pinpoint

   pinpoint/installation_and_use
   pinpoint/tutorial
   pinpoint/in_vivo_alignment
   ephys_link/installation_and_use

.. toctree::
   :hidden:
   :maxdepth: 2
   :caption: Urchin

   urchin/installation_and_use
   urchin/tutorial

.. toctree::
   :hidden:
   :maxdepth: 2
   :caption: VBL

   about/overview
   about/vbl_manual
   development

.. toctree::
   :hidden:
   :maxdepth: 2
   :caption: API Reference

   api_reference_urn.rst
   api_reference_ephys_link.rst