Index

A

ALL (Side attribute)

Atlas (class in oursin.atlas.ontology)

B

bcolors (class in oursin.client) bind_events() (Server method)

bypass_calibration() (PlatformHandler method) (Server method)

C

calibrate() (NewScaleManipulator method) (PlatformHandler method) (Server method) call_calibrate() (SensapexManipulator method) Camera (class in oursin.camera) capture_video() (Camera method) catch_all() (Server static method) change_id() (in module oursin.client) clear() (Atlas method) (in module oursin.lines) (in module oursin.meshes) (in module oursin.particles) (in module oursin.probes) (in module oursin.renderer) (in module oursin.text) (in module oursin.texture) (in module oursin.volumes)

clear_clicks() (in module oursin.volumes) close() (in module oursin.client) close_server() (Server method) colormap() (in module oursin.volumes) compress_volume() (in module oursin.volumes) connect() (in module oursin.client) (Server method) connected() (in module oursin.client) create() (in module oursin.lines) (in module oursin.meshes) (in module oursin.probes) (in module oursin.text) (in module oursin.texture) (Texture method) CustomAtlas (class in oursin.atlas.ontology)

D

delete() (Camera method) (in module oursin.lines) (in module oursin.meshes) (in module oursin.probes) (in module oursin.texture) (Line method) (Mesh method) (ParticleSystem method) (Probe method) (Text method) (Texture method) (Volume method)

disconnect() (in module oursin.client) (Server method) dprint() (in module ephys_link.common) drive_to_depth() (NewScaleManipulator method) (PlatformHandler method) (SensapexManipulator method) (Server method) (UMP3Manipulator method)

E

ephys_link module ephys_link.common module ephys_link.platform_handler module ephys_link.platform_manipulator module ephys_link.platforms.new_scale_handler module ephys_link.platforms.new_scale_manipulator module

ephys_link.platforms.new_scale_pathfinder_handler module ephys_link.platforms.sensapex_handler module ephys_link.platforms.sensapex_manipulator module ephys_link.platforms.ump3_handler module ephys_link.platforms.ump3_manipulator module ephys_link.server module

F

FAIL (bcolors attribute) formatted_color() (in module oursin.utils)

formatted_vector2() (in module oursin.utils) formatted_vector3() (in module oursin.utils) FULL (Side attribute)

G

get_angles() (PlatformHandler method) (Server method) get_areas() (Atlas method) get_calibrated() (NewScaleManipulator method) (SensapexManipulator method) get_can_write() (NewScaleManipulator method) (SensapexManipulator method) get_manipulators() (PlatformHandler method) (Server method) get_pinpoint_id() (Server method) get_pos() (NewScaleManipulator method) (PlatformHandler method) (SensapexManipulator method) (Server method) (UMP3Manipulator method)

get_shank_count() (PlatformHandler method) (Server method) get_version() (Server static method) goto_pos() (NewScaleManipulator method) (PlatformHandler method) (SensapexManipulator method) (Server method) (UMP3Manipulator method)

H

hex_to_rgb() (in module oursin.utils)

I

is_running_in_colab() (in module oursin.renderer)

L

launch() (Server method) launch_for_proxy() (Server method) launch_setup() (Server method) LEFT (Side attribute)

Line (class in oursin.lines) list_of_list2vector3() (in module oursin.utils) load() (Atlas method) load_defaults() (Atlas method)

M

Mesh (class in oursin.meshes) message() (in module oursin.client) module ephys_link ephys_link.common ephys_link.platform_handler ephys_link.platform_manipulator ephys_link.platforms.new_scale_handler ephys_link.platforms.new_scale_manipulator ephys_link.platforms.new_scale_pathfinder_handler ephys_link.platforms.sensapex_handler ephys_link.platforms.sensapex_manipulator ephys_link.platforms.ump3_handler ephys_link.platforms.ump3_manipulator ephys_link.server oursin, [1] oursin.atlas oursin.atlas.ontology oursin.camera oursin.client oursin.colors oursin.colors.colors oursin.colors.xkcd_rgb oursin.lines oursin.meshes oursin.particles oursin.probes oursin.renderer oursin.text oursin.texture oursin.utils oursin.volumes

N

NewScaleHandler (class in ephys_link.platforms.new_scale_handler)

NewScaleManipulator (class in ephys_link.platforms.new_scale_manipulator) NewScalePathfinderHandler (class in ephys_link.platforms.new_scale_pathfinder_handler)

O

on_camera_img() (in module oursin.camera) on_camera_img_meta() (in module oursin.camera) oursin module, [1] oursin.atlas module oursin.atlas.ontology module oursin.camera module oursin.client module oursin.colors module oursin.colors.colors module oursin.colors.xkcd_rgb module

oursin.lines module oursin.meshes module oursin.particles module oursin.probes module oursin.renderer module oursin.text module oursin.texture module oursin.utils module oursin.volumes module

P

ParticleSystem (class in oursin.particles) PlatformHandler (class in ephys_link.platform_handler)

PlatformManipulator (class in ephys_link.platform_manipulator) Probe (class in oursin.probes)

Q

query_all_axes() (NewScaleManipulator method)

query_data() (NewScalePathfinderHandler method) query_manipulator_data() (NewScalePathfinderHandler method)

R

receive_camera_img() (in module oursin.client) receive_camera_img_meta() (in module oursin.client) receive_dock_callback() (in module oursin.client) receive_neuron_callback() (in module oursin.client) receive_volume_click() (in module oursin.client) register_manipulator() (PlatformHandler method) (Server method)

reset() (PlatformHandler method) reset_can_write() (NewScaleManipulator method) (SensapexManipulator method) rgb_to_hex() (in module oursin.utils) rgba_to_hex() (in module oursin.utils) RIGHT (Side attribute)

S

sanitize_color() (in module oursin.utils) sanitize_float() (in module oursin.utils) sanitize_list() (in module oursin.utils) sanitize_material() (in module oursin.utils) sanitize_side() (in module oursin.utils) sanitize_string() (in module oursin.utils) sanitize_vector3() (in module oursin.utils) save_clicks() (in module oursin.volumes) screenshot() (Camera method) SensapexHandler (class in ephys_link.platforms.sensapex_handler) SensapexManipulator (class in ephys_link.platforms.sensapex_manipulator) Server (class in ephys_link.server) set_alpha() (Structure method) set_alphas() (Atlas method) set_angle() (Probe method) set_angles() (in module oursin.probes) set_background_color() (Camera method) set_brain_rotation() (in module oursin.camera) set_calibrated() (NewScaleManipulator method) (SensapexManipulator method) set_can_write() (NewScaleManipulator method) (PlatformHandler method) (SensapexManipulator method) (Server method) set_color() (Line method) (Mesh method) (Probe method) (Structure method) (Text method) set_color_intensity() (Atlas method) set_colormap() (Atlas method) set_colors() (Atlas method) (in module oursin.meshes) (in module oursin.probes) (in module oursin.text) (ParticleSystem method) set_controllable() (Camera method) set_font_size() (Text method) set_font_sizes() (in module oursin.text) set_image() (Texture method) set_images() (in module oursin.texture) set_inside_brain() (NewScaleManipulator method) (PlatformHandler method) (SensapexManipulator method) (Server method)

set_intensity() (Structure method) set_light_camera() (in module oursin.camera) set_light_rotation() (in module oursin.camera) set_material() (Mesh method) (ParticleSystem method) (Structure method) set_materials() (Atlas method) (in module oursin.meshes) set_mode() (Camera method) set_offset() (Texture method) set_pan() (Camera method) set_position() (Mesh method) (Probe method) (Text method) (Texture method) set_positions() (in module oursin.meshes) (in module oursin.probes) (in module oursin.text) (in module oursin.texture) (Line method) (ParticleSystem method) set_reference_coord() (Atlas method) set_rotation() (Camera method) set_scale() (Mesh method) (Probe method) set_scales() (in module oursin.meshes) (in module oursin.probes) set_sizes() (ParticleSystem method) set_target_coordinate() (Camera method) set_text() (Text method) set_texts() (in module oursin.text) set_visibilities() (Atlas method) set_visibility() (Structure method) set_zoom() (Camera method) setup() (in module oursin.camera) (in module oursin.renderer) Side (class in oursin.utils) stop() (NewScaleManipulator method) (PlatformHandler method) (PlatformManipulator method) (SensapexManipulator method) (Server method) Structure (class in oursin.atlas.ontology)

T

Text (class in oursin.text)

Texture (class in oursin.texture)

U

UMP3Handler (class in ephys_link.platforms.ump3_handler) UMP3Manipulator (class in ephys_link.platforms.ump3_manipulator) unregister_manipulator() (PlatformHandler method) (Server method)

update() (Volume method) urchin_loaded_callback() (in module oursin.client)

V

VALID_MANIPULATOR_IDS (NewScalePathfinderHandler attribute)

vector4_to_array() (in module ephys_link.common) Volume (class in oursin.volumes)

W

WARNING (bcolors attribute)